Author/s: Raquel Ordoñez, Marta Kulis, Nuria Russiñol, Vicente Chapaprieta, Arantxa Carrasco-Leon, Beatriz García-Torre, Stella Charampopoulou, Guillem Clot, Renée Beekman, Cem Meydan, Martí Duran-Ferrer, Núria Verdaguer-Dot, Roser Vilarrasa-Blasi, Paula Soler-Vila, Leire Garate, Estíbaliz Miranda, Edurne San José-Enériz, Juan R. Rodriguez-Madoz, Teresa Ezponda, Rebeca Martínez-Turrilas, Amaia Vilas-Zornoza, David Lara-Astiaso, Daphné Dupéré-Richer, Joost H.A. Martens, Halima El-Omri, Ruba Y Taha, Maria J. Calasanz, Bruno Paiva, Jesus San Miguel, Paul Flicek, Ivo Gut, Ari Melnick, Constantine S. Mitsiades, Jonathan D. Licht, Elias Campo, Hendrik G. Stunnenberg, Xabier Agirre, Felipe Prosper and Jose I. Martin-Subero
Please, use this link to access the MM Referece Epigenome tracks in the UCSC genome browser. The presented tracks are briefly described in this document.
Additional results can be found in the next table.
File | Details | Size | Download |
MM & B cells chromatin states |
Assignment of 12 different chromatin states in 200 base pair bins (GRCh38) using the chromHMM software |
50M | Link |
Normalized signal intensities of MM reference epigenome & B cells for RNA-seq, H3K27ac, H3K4me1, H3K4me3, H3K9me3, H3K27me3, H3K36me3 & ATAC-seq |
Variance stabilizing transformed data signals as determined using DEseq2 in consensus peaks (GRCh38) for the different histone marks and ATAC-seq.
FPKM gene expression values for RNA-seq (gencode22). |
73M | Link |
MM reference epigenome & B cells methylation |
DNA methylation estimates (GRCh38) determined by whole genome bisulfite sequencing. The data is divided into hypo and hypermethylated CpGs in multiple myeloma. |
56M | Link |